Table 2. Prefab results
Aligner0<%ID⩽100 (1682 families)0⩽%ID⩽20 (912 families)20⩽%ID⩽40 (563 families)40⩽%ID⩽70 (117 families)70⩽%ID⩽100 (90 families)Total time (s) (1682 families)Consistency
MSAprobs0.7370.5910.8890.9650.97151 286.00Yes
MAFFT (auto)0.7210.5690.8760.9610.9794544.45Yes
Probalign0.7190.5630.8810.9610.97735 117.30Yes
Probcons0.7170.5620.8760.9550.97246 908.30Yes
T‐Coffee0.7100.5580.8650.9500.972175 789.00Yes
Clustal Ω0.7000.5350.8660.9670.9801698.06No
MUSCLE0.6770.5070.8500.9460.9762068.56No
MAFFT0.6770.5130.8360.9610.979225.56No
Kalign0.6490.4740.8170.9570.97980.81No
ClustalW20.6170.4300.7970.9330.9753433.53No
Dialign0.5950.3980.7830.9400.97418 909.70No
PRANK0.5860.3900.7670.9510.978351 498.00No
FSA0.5340.2770.7910.9650.976229 391.00No
  • Total column scores (TC) are shown for different percent identity ranges; the second column is the average score over all test cases. The total run time in seconds is shown in the second last column. The last column indicates if the method is consistency based.